A three-enzyme tagging cascade
The ubiquitin-proteasome system is the main route for degrading specific proteins in the cytosol and nucleus. Tagging runs through three enzyme classes: E1 activates ubiquitin using ATP, E2 carries it, and an E3 ligase recognizes the target protein and transfers ubiquitin onto it.
Repeating this builds a polyubiquitin chain. A chain linked in a particular way acts as the signal that the protein should be destroyed, while the very large number of distinct E3 ligases provides the selectivity for which proteins get marked.
Feeding the shredder
Tagged proteins are delivered to the 26S proteasome, a barrel-shaped complex with a regulatory cap that recognizes the ubiquitin chain, unfolds the protein, and feeds it into an inner chamber where proteases cut it into short peptides. The ubiquitin tags are recycled.
This controlled destruction governs the cell cycle, the stress response, and the supply of antigen fragments to the immune system. Proteasome inhibitor drugs are used in certain cancers, underscoring how essential this turnover is to dividing cells.